Resolwe SDK for Python
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Resolwe SDK for Python
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Index
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Index
_
|
A
|
B
|
C
|
D
|
E
|
F
|
G
|
I
|
L
|
M
|
N
|
O
|
P
|
Q
|
R
|
S
|
T
|
U
|
V
_
__init__() (resdk.tables.methylation.MethylationTables method)
(resdk.tables.microarray.MATables method)
(resdk.tables.ml_ready.MLTables method)
(resdk.tables.rna.RNATables method)
(resdk.tables.variant.VariantTables method)
A
add_sample() (resdk.resources.Relation method)
add_users() (resdk.resources.Group method)
aliases (resdk.resources.kb.Feature attribute)
all() (resdk.ResolweQuery method)
AnnotationField (class in resdk.resources)
AnnotationGroup (class in resdk.resources)
annotations (resdk.resources.Sample property)
AnnotationValue (class in resdk.resources)
assign_to_billing_account() (resdk.resources.Collection method)
B
background (resdk.resources.Sample property)
BaseCollection (class in resdk.resources.collection)
BaseResolweResource (class in resdk.resources.base)
BaseResource (class in resdk.resources.base)
beta (resdk.tables.methylation.MethylationTables property)
build (resdk.tables.rna.RNATables property)
C
category (resdk.resources.Process attribute)
(resdk.resources.Relation attribute)
check_heterogeneous_collections() (resdk.tables.rna.RNATables method)
checksum (resdk.resources.Data attribute)
(resdk.resources.Geneset attribute)
(resdk.resources.Metadata attribute)
children (resdk.resources.Data property)
(resdk.resources.Geneset property)
(resdk.resources.Metadata property)
clear_cache() (resdk.ResolweQuery method)
(resdk.resources.permissions.PermissionsManager method)
(resdk.tables.methylation.MethylationTables static method)
(resdk.tables.microarray.MATables static method)
(resdk.tables.rna.RNATables static method)
(resdk.tables.variant.VariantTables static method)
Collection (class in resdk.resources)
collection (resdk.resources.Data property)
(resdk.resources.Geneset property)
(resdk.resources.Metadata property)
(resdk.resources.Relation property)
(resdk.resources.Sample property)
contributor (resdk.resources.base.BaseResolweResource property)
(resdk.resources.Collection property)
(resdk.resources.collection.BaseCollection property)
(resdk.resources.Data property)
(resdk.resources.DescriptorSchema property)
(resdk.resources.Geneset property)
(resdk.resources.Metadata property)
(resdk.resources.Process property)
(resdk.resources.Relation property)
(resdk.resources.Sample property)
copy_from() (resdk.resources.permissions.PermissionsManager method)
count() (resdk.ResolweQuery method)
create() (resdk.ResolweQuery method)
create_background_relation() (resdk.resources.Collection method)
create_compare_relation() (resdk.resources.Collection method)
create_group_relation() (resdk.resources.Collection method)
create_series_relation() (resdk.resources.Collection method)
created (resdk.resources.base.BaseResolweResource property)
(resdk.resources.Collection property)
(resdk.resources.collection.BaseCollection property)
(resdk.resources.Data property)
(resdk.resources.DescriptorSchema property)
(resdk.resources.Geneset property)
(resdk.resources.Metadata property)
(resdk.resources.Process property)
(resdk.resources.Relation property)
(resdk.resources.Sample property)
current_user_permissions (resdk.resources.base.BaseResolweResource attribute)
(resdk.resources.Collection attribute)
(resdk.resources.collection.BaseCollection attribute)
(resdk.resources.Data attribute)
(resdk.resources.DescriptorSchema attribute)
(resdk.resources.Geneset attribute)
(resdk.resources.Metadata attribute)
(resdk.resources.Process attribute)
(resdk.resources.Relation attribute)
(resdk.resources.Sample attribute)
D
Data (class in resdk.resources)
data (resdk.resources.Collection property)
(resdk.resources.collection.BaseCollection property)
(resdk.resources.Sample property)
data_name (resdk.resources.Process attribute)
data_types() (resdk.resources.Collection method)
(resdk.resources.collection.BaseCollection method)
(resdk.resources.Sample method)
data_usage() (resdk.Resolwe method)
delete() (resdk.ResolweQuery method)
(resdk.resources.AnnotationField method)
(resdk.resources.AnnotationGroup method)
(resdk.resources.AnnotationValue method)
(resdk.resources.base.BaseResolweResource method)
(resdk.resources.base.BaseResource method)
(resdk.resources.Collection method)
(resdk.resources.collection.BaseCollection method)
(resdk.resources.Data method)
(resdk.resources.DescriptorSchema method)
(resdk.resources.Geneset method)
(resdk.resources.Group method)
(resdk.resources.kb.Feature method)
(resdk.resources.kb.Mapping method)
(resdk.resources.Metadata method)
(resdk.resources.Process method)
(resdk.resources.Relation method)
(resdk.resources.Sample method)
(resdk.resources.User method)
depth (resdk.tables.variant.VariantTables property)
depth_a (resdk.tables.variant.VariantTables property)
depth_c (resdk.tables.variant.VariantTables property)
depth_g (resdk.tables.variant.VariantTables property)
depth_t (resdk.tables.variant.VariantTables property)
description (resdk.resources.Collection attribute)
(resdk.resources.collection.BaseCollection attribute)
(resdk.resources.DescriptorSchema attribute)
(resdk.resources.kb.Feature attribute)
(resdk.resources.Process attribute)
(resdk.resources.Sample attribute)
descriptor (resdk.resources.Collection attribute)
(resdk.resources.collection.BaseCollection attribute)
(resdk.resources.Data attribute)
(resdk.resources.Geneset attribute)
(resdk.resources.Metadata attribute)
(resdk.resources.Relation attribute)
(resdk.resources.Sample attribute)
descriptor_dirty (resdk.resources.Collection attribute)
(resdk.resources.collection.BaseCollection attribute)
(resdk.resources.Data attribute)
(resdk.resources.Geneset attribute)
(resdk.resources.Metadata attribute)
(resdk.resources.Relation attribute)
(resdk.resources.Sample attribute)
descriptor_schema (resdk.resources.Collection property)
(resdk.resources.collection.BaseCollection property)
(resdk.resources.Data property)
(resdk.resources.Geneset property)
(resdk.resources.Metadata property)
(resdk.resources.Relation property)
(resdk.resources.Sample property)
DescriptorSchema (class in resdk.resources)
df (resdk.resources.Metadata property)
df_bytes (resdk.resources.Metadata property)
download() (resdk.resources.Collection method)
(resdk.resources.collection.BaseCollection method)
(resdk.resources.Data method)
(resdk.resources.Geneset method)
(resdk.resources.Metadata method)
(resdk.resources.Sample method)
duplicate() (resdk.resources.Collection method)
(resdk.resources.Data method)
(resdk.resources.Geneset method)
(resdk.resources.Metadata method)
(resdk.resources.Sample method)
duplicated (resdk.resources.Collection attribute)
(resdk.resources.collection.BaseCollection attribute)
(resdk.resources.Data attribute)
(resdk.resources.Geneset attribute)
(resdk.resources.Metadata attribute)
(resdk.resources.Sample attribute)
E
editors (resdk.resources.permissions.PermissionsManager property)
entity_always_create (resdk.resources.Process attribute)
entity_descriptor_schema (resdk.resources.Process attribute)
entity_input (resdk.resources.Process attribute)
entity_type (resdk.resources.Process attribute)
exp (resdk.tables.microarray.MATables property)
(resdk.tables.ml_ready.MLTables property)
(resdk.tables.rna.RNATables property)
F
Feature (class in resdk.resources.kb)
feature_id (resdk.resources.kb.Feature attribute)
fetch() (resdk.resources.permissions.PermissionsManager method)
fetch_object() (resdk.resources.AnnotationField class method)
(resdk.resources.AnnotationGroup class method)
(resdk.resources.AnnotationValue class method)
(resdk.resources.base.BaseResolweResource class method)
(resdk.resources.base.BaseResource class method)
(resdk.resources.Collection class method)
(resdk.resources.collection.BaseCollection class method)
(resdk.resources.Data class method)
(resdk.resources.DescriptorSchema class method)
(resdk.resources.Geneset class method)
(resdk.resources.Group class method)
(resdk.resources.kb.Feature class method)
(resdk.resources.kb.Mapping class method)
(resdk.resources.Metadata class method)
(resdk.resources.Process class method)
(resdk.resources.Relation class method)
(resdk.resources.Sample class method)
(resdk.resources.User class method)
field (resdk.resources.AnnotationValue property)
fields() (resdk.resources.AnnotationField method)
(resdk.resources.AnnotationGroup method)
(resdk.resources.AnnotationValue method)
(resdk.resources.base.BaseResolweResource method)
(resdk.resources.base.BaseResource method)
(resdk.resources.Collection method)
(resdk.resources.collection.BaseCollection method)
(resdk.resources.Data method)
(resdk.resources.DescriptorSchema method)
(resdk.resources.Geneset method)
(resdk.resources.Group method)
(resdk.resources.kb.Feature method)
(resdk.resources.kb.Mapping method)
(resdk.resources.Metadata method)
(resdk.resources.Process method)
(resdk.resources.Relation method)
(resdk.resources.Sample method)
(resdk.resources.User method)
files() (resdk.resources.Collection method)
(resdk.resources.collection.BaseCollection method)
(resdk.resources.Data method)
(resdk.resources.Geneset method)
(resdk.resources.Metadata method)
(resdk.resources.Sample method)
fill_spaces() (in module resdk.resources.utils)
filter (resdk.tables.variant.VariantTables property)
filter() (resdk.ResolweQuery method)
finished (resdk.resources.Data property)
(resdk.resources.Geneset property)
(resdk.resources.Metadata property)
first_name (resdk.resources.User attribute)
flatten_field() (in module resdk.resources.utils)
full_name (resdk.resources.kb.Feature attribute)
G
genes (resdk.resources.Geneset property)
Geneset (class in resdk.resources)
geneset (resdk.tables.variant.VariantTables property)
get() (resdk.ResolweQuery method)
get_annotation() (resdk.resources.Sample method)
get_annotations() (resdk.resources.Sample method)
get_bam() (resdk.resources.Sample method)
get_collection_id() (in module resdk.resources.utils)
get_cuffquant() (resdk.resources.Sample method)
get_data_id() (in module resdk.resources.utils)
get_descriptor_schema_id() (in module resdk.resources.utils)
get_df() (resdk.resources.Metadata method)
get_expression() (resdk.resources.Sample method)
get_macs() (resdk.resources.Sample method)
get_name() (resdk.resources.User method)
get_or_run() (resdk.Resolwe method)
get_primary_bam() (resdk.resources.Sample method)
get_process_id() (in module resdk.resources.utils)
get_query_by_resource() (resdk.Resolwe method)
get_reads() (resdk.resources.Sample method)
get_relation_id() (in module resdk.resources.utils)
get_sample_id() (in module resdk.resources.utils)
get_user_id() (in module resdk.resources.utils)
Group (class in resdk.resources)
group (resdk.resources.AnnotationField property)
I
id (resdk.resources.AnnotationField attribute)
(resdk.resources.AnnotationGroup attribute)
(resdk.resources.AnnotationValue attribute)
(resdk.resources.base.BaseResolweResource attribute)
(resdk.resources.base.BaseResource attribute)
(resdk.resources.Collection attribute)
(resdk.resources.collection.BaseCollection attribute)
(resdk.resources.Data attribute)
(resdk.resources.DescriptorSchema attribute)
(resdk.resources.Geneset attribute)
(resdk.resources.Group attribute)
(resdk.resources.kb.Feature attribute)
(resdk.resources.kb.Mapping attribute)
(resdk.resources.Metadata attribute)
(resdk.resources.Process attribute)
(resdk.resources.Relation attribute)
(resdk.resources.Sample attribute)
(resdk.resources.User attribute)
input (resdk.resources.Data attribute)
(resdk.resources.Geneset attribute)
(resdk.resources.Metadata attribute)
input_schema (resdk.resources.Process attribute)
is_active (resdk.resources.Process attribute)
is_background (resdk.resources.Sample property)
is_collection() (in module resdk.resources.utils)
is_data() (in module resdk.resources.utils)
is_descriptor_schema() (in module resdk.resources.utils)
is_group() (in module resdk.resources.utils)
is_process() (in module resdk.resources.utils)
is_relation() (in module resdk.resources.utils)
is_sample() (in module resdk.resources.utils)
is_user() (in module resdk.resources.utils)
iterate() (resdk.ResolweQuery method)
iterate_fields() (in module resdk.resources.utils)
iterate_schema() (in module resdk.resources.utils)
L
log_to_stdout() (resdk.resdk_logger method)
login() (resdk.Resolwe method)
M
Mapping (class in resdk.resources.kb)
MATables (class in resdk.tables.microarray)
meta (resdk.tables.methylation.MethylationTables property)
(resdk.tables.microarray.MATables property)
(resdk.tables.rna.RNATables property)
(resdk.tables.variant.VariantTables property)
Metadata (class in resdk.resources)
MethylationTables (class in resdk.tables.methylation)
MLTables (class in resdk.tables.ml_ready)
modified (resdk.resources.base.BaseResolweResource property)
(resdk.resources.Collection property)
(resdk.resources.collection.BaseCollection property)
(resdk.resources.Data property)
(resdk.resources.DescriptorSchema property)
(resdk.resources.Geneset property)
(resdk.resources.Metadata property)
(resdk.resources.Process property)
(resdk.resources.Relation property)
(resdk.resources.Sample property)
module
resdk.exceptions
resdk.query
resdk.resdk_logger
resdk.resolwe
resdk.resources
resdk.resources.kb
resdk.resources.utils
resdk.tables
mval (resdk.tables.methylation.MethylationTables property)
N
name (resdk.resources.base.BaseResolweResource attribute)
(resdk.resources.Collection attribute)
(resdk.resources.collection.BaseCollection attribute)
(resdk.resources.Data attribute)
(resdk.resources.DescriptorSchema attribute)
(resdk.resources.Geneset attribute)
(resdk.resources.Group attribute)
(resdk.resources.kb.Feature attribute)
(resdk.resources.Metadata attribute)
(resdk.resources.Process attribute)
(resdk.resources.Relation attribute)
(resdk.resources.Sample attribute)
O
output (resdk.resources.Data attribute)
(resdk.resources.Geneset attribute)
(resdk.resources.Metadata attribute)
output_schema (resdk.resources.Process attribute)
owners (resdk.resources.permissions.PermissionsManager property)
P
parents (resdk.resources.Data property)
(resdk.resources.Geneset property)
(resdk.resources.Metadata property)
parse_resolwe_datetime() (in module resdk.resources.utils)
partitions (resdk.resources.Relation attribute)
permissions (resdk.resources.base.BaseResolweResource property)
(resdk.resources.Collection property)
(resdk.resources.collection.BaseCollection property)
(resdk.resources.Data property)
(resdk.resources.DescriptorSchema property)
(resdk.resources.Geneset property)
(resdk.resources.Metadata property)
(resdk.resources.Process property)
(resdk.resources.Relation property)
(resdk.resources.Sample property)
PermissionsManager (class in resdk.resources.permissions)
persistence (resdk.resources.Process attribute)
print_inputs() (resdk.resources.Process method)
priority (resdk.resources.Process attribute)
Process (class in resdk.resources)
process (resdk.resources.Data property)
(resdk.resources.Geneset property)
(resdk.resources.Metadata property)
process_cores (resdk.resources.Data attribute)
(resdk.resources.Geneset attribute)
(resdk.resources.Metadata attribute)
process_error (resdk.resources.Data attribute)
(resdk.resources.Geneset attribute)
(resdk.resources.Metadata attribute)
process_info (resdk.resources.Data attribute)
(resdk.resources.Geneset attribute)
(resdk.resources.Metadata attribute)
process_memory (resdk.resources.Data attribute)
(resdk.resources.Geneset attribute)
(resdk.resources.Metadata attribute)
process_progress (resdk.resources.Data attribute)
(resdk.resources.Geneset attribute)
(resdk.resources.Metadata attribute)
process_rc (resdk.resources.Data attribute)
(resdk.resources.Geneset attribute)
(resdk.resources.Metadata attribute)
process_resources (resdk.resources.Data attribute)
(resdk.resources.Geneset attribute)
(resdk.resources.Metadata attribute)
process_warning (resdk.resources.Data attribute)
(resdk.resources.Geneset attribute)
(resdk.resources.Metadata attribute)
Q
qc (resdk.tables.methylation.MethylationTables property)
(resdk.tables.microarray.MATables property)
(resdk.tables.rna.RNATables property)
(resdk.tables.variant.VariantTables property)
R
rc (resdk.tables.rna.RNATables property)
readable_columns (resdk.tables.rna.RNATables property)
readable_index (resdk.tables.methylation.MethylationTables property)
(resdk.tables.microarray.MATables property)
(resdk.tables.rna.RNATables property)
(resdk.tables.variant.VariantTables property)
Relation (class in resdk.resources)
relations (resdk.resources.Collection property)
(resdk.resources.Sample property)
remove_samples() (resdk.resources.Relation method)
remove_users() (resdk.resources.Group method)
requirements (resdk.resources.Process attribute)
resdk.exceptions
module
resdk.query
module
resdk.resdk_logger
module
resdk.resolwe
module
resdk.resources
module
resdk.resources.kb
module
resdk.resources.utils
module
resdk.tables
module
Resolwe (class in resdk)
ResolweQuery (class in resdk)
RNATables (class in resdk.tables.rna)
run (resdk.resources.Process attribute)
run() (resdk.Resolwe method)
S
Sample (class in resdk.resources)
sample (resdk.resources.AnnotationValue property)
(resdk.resources.Data property)
(resdk.resources.Geneset property)
(resdk.resources.Metadata property)
sample_id (resdk.resources.AnnotationValue attribute)
samples (resdk.resources.Collection property)
(resdk.resources.Relation property)
save() (resdk.resources.AnnotationField method)
(resdk.resources.AnnotationGroup method)
(resdk.resources.AnnotationValue method)
(resdk.resources.base.BaseResolweResource method)
(resdk.resources.base.BaseResource method)
(resdk.resources.Collection method)
(resdk.resources.collection.BaseCollection method)
(resdk.resources.Data method)
(resdk.resources.DescriptorSchema method)
(resdk.resources.Geneset method)
(resdk.resources.Group method)
(resdk.resources.kb.Feature method)
(resdk.resources.kb.Mapping method)
(resdk.resources.Metadata method)
(resdk.resources.Process method)
(resdk.resources.Relation method)
(resdk.resources.Sample method)
(resdk.resources.User method)
scheduled (resdk.resources.Data attribute)
(resdk.resources.Geneset attribute)
(resdk.resources.Metadata attribute)
scheduling_class (resdk.resources.Process attribute)
schema (resdk.resources.DescriptorSchema attribute)
search() (resdk.ResolweQuery method)
set_annotation() (resdk.resources.Sample method)
set_annotations() (resdk.resources.Sample method)
set_df() (resdk.resources.Metadata method)
set_group() (resdk.resources.permissions.PermissionsManager method)
set_index() (resdk.resources.Metadata method)
set_operator() (resdk.resources.Geneset method)
set_public() (resdk.resources.permissions.PermissionsManager method)
set_user() (resdk.resources.permissions.PermissionsManager method)
settings (resdk.resources.Collection attribute)
(resdk.resources.collection.BaseCollection attribute)
(resdk.resources.Sample attribute)
size (resdk.resources.Data attribute)
(resdk.resources.Geneset attribute)
(resdk.resources.Metadata attribute)
slug (resdk.resources.base.BaseResolweResource attribute)
(resdk.resources.Collection attribute)
(resdk.resources.collection.BaseCollection attribute)
(resdk.resources.Data attribute)
(resdk.resources.DescriptorSchema attribute)
(resdk.resources.Geneset attribute)
(resdk.resources.Metadata attribute)
(resdk.resources.Process attribute)
(resdk.resources.Relation attribute)
(resdk.resources.Sample attribute)
source (resdk.resources.Geneset property)
(resdk.resources.kb.Feature attribute)
source_db (resdk.resources.kb.Mapping attribute)
source_id (resdk.resources.kb.Mapping attribute)
source_species (resdk.resources.kb.Mapping attribute)
species (resdk.resources.Geneset property)
(resdk.resources.kb.Feature attribute)
start_logging() (resdk.resdk_logger method)
started (resdk.resources.Data property)
(resdk.resources.Geneset property)
(resdk.resources.Metadata property)
status (resdk.resources.Data attribute)
(resdk.resources.Geneset attribute)
(resdk.resources.Metadata attribute)
stdout() (resdk.resources.Data method)
(resdk.resources.Geneset method)
(resdk.resources.Metadata method)
sub_type (resdk.resources.kb.Feature attribute)
T
tags (resdk.resources.Collection attribute)
(resdk.resources.collection.BaseCollection attribute)
(resdk.resources.Data attribute)
(resdk.resources.Geneset attribute)
(resdk.resources.Metadata attribute)
(resdk.resources.Sample attribute)
target_db (resdk.resources.kb.Mapping attribute)
target_id (resdk.resources.kb.Mapping attribute)
target_species (resdk.resources.kb.Mapping attribute)
type (resdk.resources.kb.Feature attribute)
(resdk.resources.Process attribute)
(resdk.resources.Relation attribute)
U
unique (resdk.resources.Metadata property)
unit (resdk.resources.Relation attribute)
update() (resdk.resources.AnnotationField method)
(resdk.resources.AnnotationGroup method)
(resdk.resources.AnnotationValue method)
(resdk.resources.base.BaseResolweResource method)
(resdk.resources.base.BaseResource method)
(resdk.resources.Collection method)
(resdk.resources.collection.BaseCollection method)
(resdk.resources.Data method)
(resdk.resources.DescriptorSchema method)
(resdk.resources.Geneset method)
(resdk.resources.Group method)
(resdk.resources.kb.Feature method)
(resdk.resources.kb.Mapping method)
(resdk.resources.Metadata method)
(resdk.resources.Process method)
(resdk.resources.Relation method)
(resdk.resources.Sample method)
(resdk.resources.User method)
User (class in resdk.resources)
users (resdk.resources.Group property)
V
validate_df() (resdk.resources.Metadata method)
ValidationError (class in resdk.exceptions)
variants (resdk.tables.variant.VariantTables property)
VariantTables (class in resdk.tables.variant)
version (resdk.resources.base.BaseResolweResource attribute)
(resdk.resources.Collection attribute)
(resdk.resources.collection.BaseCollection attribute)
(resdk.resources.Data attribute)
(resdk.resources.DescriptorSchema attribute)
(resdk.resources.Geneset attribute)
(resdk.resources.Metadata attribute)
(resdk.resources.Process attribute)
(resdk.resources.Relation attribute)
(resdk.resources.Sample attribute)
version_check() (resdk.Resolwe method)
viewers (resdk.resources.permissions.PermissionsManager property)
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